Following my blog post:
http://klein-gould.blogspot.com/2013/07/step-by-step-subversive-install-for.html
1. Install subversive plugins OK
2. Install Subversive SVN connectors OK
3. Created new workspace:
Code/JavaEclipseWorkspace
Importing google code
4. Importing scikit. OK
Wednesday, August 6, 2014
Tuesday, August 5, 2014
New iMac Setup
1. Installing Xcode version 5.1.1. Check.
2. Installed X11 by typing
xcode-select --install
into terminal. Was asked if I wanted to install command line tools. Successful.
3. Installing Quicksilver. Check.
4. Installing Dropbox. Check.
5. Installing Skype. Check.
6. Attempting to install homebrew. Yikes!
First- change shell to bash:
http://osxdaily.com/2012/03/21/change-shell-mac-os-x/
Here goes:
rdominguez6181:ofcTest2 racheledominguez$ ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
==> This script will install:
/usr/local/bin/brew
/usr/local/Library/...
/usr/local/share/man/man1/brew.1
==> The following directories will be made group writable:
/usr/local/.
/usr/local/bin
/usr/local/lib
/usr/local/share
/usr/local/share/man
/usr/local/share/man/man1
==> The following directories will have their group set to admin:
/usr/local/.
/usr/local/bin
/usr/local/lib
/usr/local/share
/usr/local/share/man
/usr/local/share/man/man1
==> /usr/bin/sudo /usr/bin/chgrp admin /usr/local/. /usr/local/bin /usr/local/lib /usr/local/share /usr/local/share/man /usr/local/share/man/man1
==> /usr/bin/sudo /bin/mkdir /Library/Caches/Homebrew
==> /usr/bin/sudo /bin/chmod g+rwx /Library/Caches/Homebrew
==> Downloading and installing Homebrew...
remote: Counting objects: 189721, done.
remote: Compressing objects: 100% (51754/51754), done.
remote: Total 189721 (delta 136794), reused 189721 (delta 136794)
Receiving objects: 100% (189721/189721), 38.28 MiB | 6.16 MiB/s, done.
Resolving deltas: 100% (136794/136794), done.
From https://github.com/Homebrew/homebrew
* [new branch] master -> origin/master
HEAD is now at 91d3c76 pyqt 4.11.1
==> Installation successful!
==> Next steps
Run `brew doctor` before you install anything
Run `brew help` to get started
WOW! Success!
brew doctor:
Warning: Some directories in /usr/local/share/man aren't writable.
This can happen if you "sudo make install" software that isn't managed
by Homebrew. If a brew tries to add locale information to one of these
directories, then the install will fail during the link step.
You should probably `chown` them:
/usr/local/share/man/de
/usr/local/share/man/de/man1
So I did.
rdominguez6181:ofcTest2 racheledominguez$ chown root /usr/local/share/man/de
rdominguez6181:ofcTest2 racheledominguez$ chown root /usr/local/share/man/de/man1
But I still get the same warnings from brew doctor.
Will try to install anyways.
run:
brew options gnuplot
7. Forgot to install XQuartz. Log out and in. Check.
8. Installing MacTex. Check.
9. Gnuplot success! Awesome! But need aquaterm now.
10. Installed aquaterm from sourceforge. Check.
2. Installed X11 by typing
xcode-select --install
into terminal. Was asked if I wanted to install command line tools. Successful.
3. Installing Quicksilver. Check.
4. Installing Dropbox. Check.
5. Installing Skype. Check.
6. Attempting to install homebrew. Yikes!
First- change shell to bash:
http://osxdaily.com/2012/03/21/change-shell-mac-os-x/
Here goes:
rdominguez6181:ofcTest2 racheledominguez$ ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
==> This script will install:
/usr/local/bin/brew
/usr/local/Library/...
/usr/local/share/man/man1/brew.1
==> The following directories will be made group writable:
/usr/local/.
/usr/local/bin
/usr/local/lib
/usr/local/share
/usr/local/share/man
/usr/local/share/man/man1
==> The following directories will have their group set to admin:
/usr/local/.
/usr/local/bin
/usr/local/lib
/usr/local/share
/usr/local/share/man
/usr/local/share/man/man1
==> /usr/bin/sudo /usr/bin/chgrp admin /usr/local/. /usr/local/bin /usr/local/lib /usr/local/share /usr/local/share/man /usr/local/share/man/man1
==> /usr/bin/sudo /bin/mkdir /Library/Caches/Homebrew
==> /usr/bin/sudo /bin/chmod g+rwx /Library/Caches/Homebrew
==> Downloading and installing Homebrew...
remote: Counting objects: 189721, done.
remote: Compressing objects: 100% (51754/51754), done.
remote: Total 189721 (delta 136794), reused 189721 (delta 136794)
Receiving objects: 100% (189721/189721), 38.28 MiB | 6.16 MiB/s, done.
Resolving deltas: 100% (136794/136794), done.
From https://github.com/Homebrew/homebrew
* [new branch] master -> origin/master
HEAD is now at 91d3c76 pyqt 4.11.1
==> Installation successful!
==> Next steps
Run `brew doctor` before you install anything
Run `brew help` to get started
WOW! Success!
brew doctor:
Warning: Some directories in /usr/local/share/man aren't writable.
This can happen if you "sudo make install" software that isn't managed
by Homebrew. If a brew tries to add locale information to one of these
directories, then the install will fail during the link step.
You should probably `chown` them:
/usr/local/share/man/de
/usr/local/share/man/de/man1
So I did.
rdominguez6181:ofcTest2 racheledominguez$ chown root /usr/local/share/man/de
rdominguez6181:ofcTest2 racheledominguez$ chown root /usr/local/share/man/de/man1
But I still get the same warnings from brew doctor.
Will try to install anyways.
run:
brew options gnuplot
7. Forgot to install XQuartz. Log out and in. Check.
8. Installing MacTex. Check.
9. Gnuplot success! Awesome! But need aquaterm now.
10. Installed aquaterm from sourceforge. Check.
Tuesday, July 29, 2014
Gnuplot first attempt to install on old office iMac using homebrew
I couldn't figure out how to install the required command line tools, and finally found this: (http://stackoverflow.com/questions/20833542/installing-command-line-tools-xcode-5)
Using xcode-select --install in Terminal and choose install tools
(I was asked if I wanted to install command line tools. Seemed to install fine.)
First attempt to install gnuplot with homebrew:
rdominguez5359:Library racheledominguez$ brew install gnuplot --cairo --latex --pdf --qt --tests --with-aquaterm --with-x --wx
==> Installing dependencies for gnuplot: lua, pkg-config, readline, libpng, jpeg, libti
==> Installing gnuplot dependency: lua
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/lua-5.1.5.mavericks.bottl
######################################################################## 100.0%
==> Pouring lua-5.1.5.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/lua/5.1.5: 15 files, 276K
==> Installing gnuplot dependency: pkg-config
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pkg-config-0.28.mavericks
######################################################################## 100.0%
==> Pouring pkg-config-0.28.mavericks.bottle.2.tar.gz
🍺 /usr/local/Cellar/pkg-config/0.28: 10 files, 604K
==> Installing gnuplot dependency: readline
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/readline-6.3.6.mavericks.
######################################################################## 100.0%
==> Pouring readline-6.3.6.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
OS X provides the BSD libedit library, which shadows libreadline.
In order to prevent conflicts when programs look for libreadline we are
defaulting this GNU Readline installation to keg-only.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/readline/lib
CPPFLAGS: -I/usr/local/opt/readline/include
==> Summary
🍺 /usr/local/Cellar/readline/6.3.6: 40 files, 2.1M
==> Installing gnuplot dependency: libpng
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.12.mavericks.b
######################################################################## 100.0%
==> Pouring libpng-1.6.12.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/libpng/1.6.12: 17 files, 1.2M
==> Installing gnuplot dependency: jpeg
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.mavericks.bottle.
######################################################################## 100.0%
==> Pouring jpeg-8d.mavericks.bottle.2.tar.gz
🍺 /usr/local/Cellar/jpeg/8d: 18 files, 780K
==> Installing gnuplot dependency: libtiff
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.mavericks.b
######################################################################## 100.0%
==> Pouring libtiff-4.0.3.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/libtiff/4.0.3: 254 files, 3.8M
==> Installing gnuplot dependency: freetype
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.3_1.maverick
######################################################################## 100.0%
==> Pouring freetype-2.5.3_1.mavericks.bottle.1.tar.gz
🍺 /usr/local/Cellar/freetype/2.5.3_1: 60 files, 2.5M
==> Installing gnuplot dependency: fontconfig
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.maveric
######################################################################## 100.0%
==> Pouring fontconfig-2.11.1.mavericks.bottle.2.tar.gz
==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv
🍺 /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3.6M
==> Installing gnuplot dependency: gettext
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gettext-0.19.2.mavericks.
######################################################################## 100.0%
==> Pouring gettext-0.19.2.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
OS X provides the BSD gettext library and some software gets confused if both are in the library path.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/gettext/lib
CPPFLAGS: -I/usr/local/opt/gettext/include
==> Summary
🍺 /usr/local/Cellar/gettext/0.19.2: 1920 files, 18M
==> Installing gnuplot dependency: libffi
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libffi-3.0.13.mavericks.b
######################################################################## 100.0%
==> Pouring libffi-3.0.13.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
Mac OS X already provides this software and installing another version in
parallel can cause all kinds of trouble.
Some formulae require a newer version of libffi.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/libffi/lib
==> Summary
🍺 /usr/local/Cellar/libffi/3.0.13: 13 files, 388K
==> Installing gnuplot dependency: glib
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/glib-2.40.0_1.mavericks.b
######################################################################## 100.0%
==> Pouring glib-2.40.0_1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/glib/2.40.0_1: 410 files, 18M
==> Installing gnuplot dependency: pixman
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pixman-0.32.6.mavericks.b
######################################################################## 100.0%
==> Pouring pixman-0.32.6.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/pixman/0.32.6: 11 files, 1.4M
==> Installing gnuplot dependency: cairo
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/cairo-1.12.16_1.mavericks
######################################################################## 100.0%
==> Pouring cairo-1.12.16_1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/cairo/1.12.16_1: 105 files, 7.6M
==> Installing gnuplot dependency: icu4c
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/icu4c-52.1.mavericks.bott
######################################################################## 100.0%
==> Pouring icu4c-52.1.mavericks.bottle.1.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
Conflicts; see: https://github.com/Homebrew/homebrew/issues/issue/167
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/icu4c/lib
CPPFLAGS: -I/usr/local/opt/icu4c/include
==> Summary
🍺 /usr/local/Cellar/icu4c/52.1: 239 files, 60M
==> Installing gnuplot dependency: harfbuzz
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/harfbuzz-0.9.33.mavericks
######################################################################## 100.0%
==> Pouring harfbuzz-0.9.33.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/harfbuzz/0.9.33: 72 files, 2.9M
==> Installing gnuplot dependency: gobject-introspection
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gobject-introspection-1.4
######################################################################## 100.0%
==> Pouring gobject-introspection-1.40.0.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/gobject-introspection/1.40.0: 192 files, 9.9M
==> Installing gnuplot dependency: pango
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pango-1.36.5.mavericks.bo
######################################################################## 100.0%
==> Pouring pango-1.36.5.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/pango/1.36.5: 132 files, 4.7M
==> Installing gnuplot dependency: pdflib-lite
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pdflib-lite-7.0.5p3.maver
######################################################################## 100.0%
==> Pouring pdflib-lite-7.0.5p3.mavericks.bottle.tar.gz
==> Caveats
pdflib-lite is not open source software; usage restrictions apply!
Be sure to understand and obey the license terms, which can be found at:
http://www.pdflib.com/download/free-software/pdflib-lite-7/pdflib-lite-licensing/
==> Summary
🍺 /usr/local/Cellar/pdflib-lite/7.0.5p3: 8 files, 6.7M
==> Installing gnuplot dependency: gd
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gd-2.1.0_2.mavericks.bott
####################################################################### 99.6%
curl: (56) Recv failure: Connection reset by peer
Error: Failed to download resource "gd"
Download failed: https://downloads.sf.net/project/machomebrew/Bottles/gd-2.1.0_2.mavericks.bottle.tar.gz
Warning: Bottle installation failed: building from source.
==> Downloading https://bitbucket.org/libgd/gd-libgd/downloads/libgd-2.1.0.tar.gz
######################################################################## 100.0%
==> ./configure --prefix=/usr/local/Cellar/gd/2.1.0_2 --with-png=/usr/local/opt/libpng --with-
==> make install
🍺 /usr/local/Cellar/gd/2.1.0_2: 33 files, 1.3M, built in 20 seconds
==> Installing gnuplot dependency: wxmac
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.1.mavericks.bot
######################################################################## 100.0%
==> Pouring wxmac-3.0.1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/wxmac/3.0.1: 777 files, 41M
==> Installing gnuplot dependency: qt
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/qt-4.8.6.mavericks.bottle
######################################################################## 100.0%
==> Pouring qt-4.8.6.mavericks.bottle.5.tar.gz
==> Caveats
We agreed to the Qt opensource license for you.
If this is unacceptable you should uninstall.
.app bundles were installed.
Run `brew linkapps` to symlink these to /Applications.
==> Summary
🍺 /usr/local/Cellar/qt/4.8.6: 2790 files, 119M
==> Installing gnuplot
==> Downloading https://downloads.sourceforge.net/project/gnuplot/gnuplot/4.6.5/gnuplot-4.6.5.
######################################################################## 100.0%
==> ./configure --disable-silent-rules --prefix=/usr/local/Cellar/gnuplot/4.6.5 --with-readlin
==> make
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[3]: *** [gnuplot] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
READ THIS: https://github.com/Homebrew/homebrew/wiki/troubleshooting
brew update said already up-to-date.
Since Canopy files were in my path, I did as Dr suggested change path: echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
This didn't get rid of the brew Dr recommendation.
Getting all kinds of clang crap upon install. Did not build. Maybe try before canopy install for new computer.
Using xcode-select --install in Terminal and choose install tools
(I was asked if I wanted to install command line tools. Seemed to install fine.)
First attempt to install gnuplot with homebrew:
rdominguez5359:Library racheledominguez$ brew install gnuplot --cairo --latex --pdf --qt --tests --with-aquaterm --with-x --wx
==> Installing dependencies for gnuplot: lua, pkg-config, readline, libpng, jpeg, libti
==> Installing gnuplot dependency: lua
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/lua-5.1.5.mavericks.bottl
######################################################################## 100.0%
==> Pouring lua-5.1.5.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/lua/5.1.5: 15 files, 276K
==> Installing gnuplot dependency: pkg-config
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pkg-config-0.28.mavericks
######################################################################## 100.0%
==> Pouring pkg-config-0.28.mavericks.bottle.2.tar.gz
🍺 /usr/local/Cellar/pkg-config/0.28: 10 files, 604K
==> Installing gnuplot dependency: readline
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/readline-6.3.6.mavericks.
######################################################################## 100.0%
==> Pouring readline-6.3.6.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
OS X provides the BSD libedit library, which shadows libreadline.
In order to prevent conflicts when programs look for libreadline we are
defaulting this GNU Readline installation to keg-only.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/readline/lib
CPPFLAGS: -I/usr/local/opt/readline/include
==> Summary
🍺 /usr/local/Cellar/readline/6.3.6: 40 files, 2.1M
==> Installing gnuplot dependency: libpng
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.12.mavericks.b
######################################################################## 100.0%
==> Pouring libpng-1.6.12.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/libpng/1.6.12: 17 files, 1.2M
==> Installing gnuplot dependency: jpeg
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.mavericks.bottle.
######################################################################## 100.0%
==> Pouring jpeg-8d.mavericks.bottle.2.tar.gz
🍺 /usr/local/Cellar/jpeg/8d: 18 files, 780K
==> Installing gnuplot dependency: libtiff
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.mavericks.b
######################################################################## 100.0%
==> Pouring libtiff-4.0.3.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/libtiff/4.0.3: 254 files, 3.8M
==> Installing gnuplot dependency: freetype
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.3_1.maverick
######################################################################## 100.0%
==> Pouring freetype-2.5.3_1.mavericks.bottle.1.tar.gz
🍺 /usr/local/Cellar/freetype/2.5.3_1: 60 files, 2.5M
==> Installing gnuplot dependency: fontconfig
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.maveric
######################################################################## 100.0%
==> Pouring fontconfig-2.11.1.mavericks.bottle.2.tar.gz
==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv
🍺 /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3.6M
==> Installing gnuplot dependency: gettext
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gettext-0.19.2.mavericks.
######################################################################## 100.0%
==> Pouring gettext-0.19.2.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
OS X provides the BSD gettext library and some software gets confused if both are in the library path.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/gettext/lib
CPPFLAGS: -I/usr/local/opt/gettext/include
==> Summary
🍺 /usr/local/Cellar/gettext/0.19.2: 1920 files, 18M
==> Installing gnuplot dependency: libffi
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libffi-3.0.13.mavericks.b
######################################################################## 100.0%
==> Pouring libffi-3.0.13.mavericks.bottle.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
Mac OS X already provides this software and installing another version in
parallel can cause all kinds of trouble.
Some formulae require a newer version of libffi.
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/libffi/lib
==> Summary
🍺 /usr/local/Cellar/libffi/3.0.13: 13 files, 388K
==> Installing gnuplot dependency: glib
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/glib-2.40.0_1.mavericks.b
######################################################################## 100.0%
==> Pouring glib-2.40.0_1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/glib/2.40.0_1: 410 files, 18M
==> Installing gnuplot dependency: pixman
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pixman-0.32.6.mavericks.b
######################################################################## 100.0%
==> Pouring pixman-0.32.6.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/pixman/0.32.6: 11 files, 1.4M
==> Installing gnuplot dependency: cairo
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/cairo-1.12.16_1.mavericks
######################################################################## 100.0%
==> Pouring cairo-1.12.16_1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/cairo/1.12.16_1: 105 files, 7.6M
==> Installing gnuplot dependency: icu4c
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/icu4c-52.1.mavericks.bott
######################################################################## 100.0%
==> Pouring icu4c-52.1.mavericks.bottle.1.tar.gz
==> Caveats
This formula is keg-only, so it was not symlinked into /usr/local.
Conflicts; see: https://github.com/Homebrew/homebrew/issues/issue/167
Generally there are no consequences of this for you. If you build your
own software and it requires this formula, you'll need to add to your
build variables:
LDFLAGS: -L/usr/local/opt/icu4c/lib
CPPFLAGS: -I/usr/local/opt/icu4c/include
==> Summary
🍺 /usr/local/Cellar/icu4c/52.1: 239 files, 60M
==> Installing gnuplot dependency: harfbuzz
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/harfbuzz-0.9.33.mavericks
######################################################################## 100.0%
==> Pouring harfbuzz-0.9.33.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/harfbuzz/0.9.33: 72 files, 2.9M
==> Installing gnuplot dependency: gobject-introspection
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gobject-introspection-1.4
######################################################################## 100.0%
==> Pouring gobject-introspection-1.40.0.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/gobject-introspection/1.40.0: 192 files, 9.9M
==> Installing gnuplot dependency: pango
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pango-1.36.5.mavericks.bo
######################################################################## 100.0%
==> Pouring pango-1.36.5.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/pango/1.36.5: 132 files, 4.7M
==> Installing gnuplot dependency: pdflib-lite
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/pdflib-lite-7.0.5p3.maver
######################################################################## 100.0%
==> Pouring pdflib-lite-7.0.5p3.mavericks.bottle.tar.gz
==> Caveats
pdflib-lite is not open source software; usage restrictions apply!
Be sure to understand and obey the license terms, which can be found at:
http://www.pdflib.com/download/free-software/pdflib-lite-7/pdflib-lite-licensing/
==> Summary
🍺 /usr/local/Cellar/pdflib-lite/7.0.5p3: 8 files, 6.7M
==> Installing gnuplot dependency: gd
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/gd-2.1.0_2.mavericks.bott
####################################################################### 99.6%
curl: (56) Recv failure: Connection reset by peer
Error: Failed to download resource "gd"
Download failed: https://downloads.sf.net/project/machomebrew/Bottles/gd-2.1.0_2.mavericks.bottle.tar.gz
Warning: Bottle installation failed: building from source.
==> Downloading https://bitbucket.org/libgd/gd-libgd/downloads/libgd-2.1.0.tar.gz
######################################################################## 100.0%
==> ./configure --prefix=/usr/local/Cellar/gd/2.1.0_2 --with-png=/usr/local/opt/libpng --with-
==> make install
🍺 /usr/local/Cellar/gd/2.1.0_2: 33 files, 1.3M, built in 20 seconds
==> Installing gnuplot dependency: wxmac
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.1.mavericks.bot
######################################################################## 100.0%
==> Pouring wxmac-3.0.1.mavericks.bottle.tar.gz
🍺 /usr/local/Cellar/wxmac/3.0.1: 777 files, 41M
==> Installing gnuplot dependency: qt
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/qt-4.8.6.mavericks.bottle
######################################################################## 100.0%
==> Pouring qt-4.8.6.mavericks.bottle.5.tar.gz
==> Caveats
We agreed to the Qt opensource license for you.
If this is unacceptable you should uninstall.
.app bundles were installed.
Run `brew linkapps` to symlink these to /Applications.
==> Summary
🍺 /usr/local/Cellar/qt/4.8.6: 2790 files, 119M
==> Installing gnuplot
==> Downloading https://downloads.sourceforge.net/project/gnuplot/gnuplot/4.6.5/gnuplot-4.6.5.
######################################################################## 100.0%
==> ./configure --disable-silent-rules --prefix=/usr/local/Cellar/gnuplot/4.6.5 --with-readlin
==> make
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[3]: *** [gnuplot] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
READ THIS: https://github.com/Homebrew/homebrew/wiki/troubleshooting
brew update said already up-to-date.
Since Canopy files were in my path, I did as Dr suggested change path: echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
This didn't get rid of the brew Dr recommendation.
Getting all kinds of clang crap upon install. Did not build. Maybe try before canopy install for new computer.
Homebrew reinstall
Research on installing Gnuplot:
Need X-Code and X11. Apple says:
"X11 is no longer included with OS X, but X11 server and client libraries for OS X are available from the XQuartz project: http://xquartz.macosforge.org. You should use the latest available version of XQuartz. " (http://support.apple.com/kb/HT5293)
As a test, I downloaded Xcode6-Beta4 and XQuartz 2.7.6. Both seemed to install fine. Needed to logout and log back in for X11.
Reinstalled homebrew. Looks good:
rdominguez5359:~ racheledominguez$ ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
==> This script will install:
/usr/local/bin/brew
/usr/local/Library/...
/usr/local/share/man/man1/brew.1
Press RETURN to continue or any other key to abort
==> /usr/bin/sudo /bin/mkdir /Library/Caches/Homebrew
Password:
==> /usr/bin/sudo /bin/chmod g+rwx /Library/Caches/Homebrew
==> Downloading and installing Homebrew...
remote: Counting objects: 188680, done.
remote: Compressing objects: 100% (51573/51573), done.
remote: Total 188680 (delta 135954), reused 188655 (delta 135934)
Receiving objects: 100% (188680/188680), 37.53 MiB | 7.43 MiB/s, done.
Resolving deltas: 100% (135954/135954), done.
From https://github.com/Homebrew/homebrew
* [new branch] master -> origin/master
Checking out files: 100% (3282/3282), done.
HEAD is now at 896dad4 Pathname.binread
==> Installation successful!
==> Next steps
Run `brew doctor` before you install anything
Run `brew help` to get started
rdominguez5359:~ racheledominguez$
Output of brew doctor:
rdominguez5359:~ racheledominguez$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Broken symlinks were found. Remove them with `brew prune`:
/usr/local/etc/bash_completion.d/gdbus-bash-completion.sh
/usr/local/etc/bash_completion.d/gresource-bash-completion.sh
/usr/local/etc/bash_completion.d/gsettings-bash-completion.sh
/usr/local/etc/pango/pango.modules
/usr/local/etc/pango/pangox.aliases
/usr/local/lib/pkgconfig/gdlib.pc
/usr/local/lib/pkgconfig/gio-2.0.pc
/usr/local/lib/pkgconfig/gio-unix-2.0.pc
/usr/local/lib/pkgconfig/glib-2.0.pc
/usr/local/lib/pkgconfig/gmodule-2.0.pc
/usr/local/lib/pkgconfig/gmodule-export-2.0.pc
/usr/local/lib/pkgconfig/gmodule-no-export-2.0.pc
/usr/local/lib/pkgconfig/gobject-2.0.pc
/usr/local/lib/pkgconfig/gthread-2.0.pc
/usr/local/lib/pkgconfig/liblzma.pc
/usr/local/lib/pkgconfig/libtiff-4.pc
/usr/local/lib/pkgconfig/lua.pc
/usr/local/lib/pkgconfig/pango.pc
/usr/local/lib/pkgconfig/pangocairo.pc
/usr/local/lib/pkgconfig/pangoft2.pc
/usr/local/lib/pkgconfig/pangox.pc
/usr/local/lib/pkgconfig/pangoxft.pc
/usr/local/lib/pkgconfig/pixman-1.pc
/usr/local/share/locale/af/LC_MESSAGES/glib20.mo
/usr/local/share/locale/am/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ar/LC_MESSAGES/glib20.mo
/usr/local/share/locale/as/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ast/LC_MESSAGES/glib20.mo
/usr/local/share/locale/az/LC_MESSAGES/glib20.mo
/usr/local/share/locale/be/LC_MESSAGES/glib20.mo
/usr/local/share/locale/be@latin/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bg/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bn_IN/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bs/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ca/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ca@valencia/LC_MESSAGES/glib20.mo
/usr/local/share/locale/cs/LC_MESSAGES/glib20.mo
/usr/local/share/locale/cy/LC_MESSAGES/glib20.mo
/usr/local/share/locale/da/LC_MESSAGES/glib20.mo
/usr/local/share/locale/de/LC_MESSAGES/glib20.mo
/usr/local/share/locale/dz/LC_MESSAGES/glib20.mo
/usr/local/share/locale/el/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en@shaw/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en_CA/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en_GB/LC_MESSAGES/glib20.mo
/usr/local/share/locale/eo/LC_MESSAGES/glib20.mo
/usr/local/share/locale/es/LC_MESSAGES/glib20.mo
/usr/local/share/locale/et/LC_MESSAGES/glib20.mo
/usr/local/share/locale/eu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ga/LC_MESSAGES/glib20.mo
/usr/local/share/locale/gl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/gu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/he/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hy/LC_MESSAGES/glib20.mo
/usr/local/share/locale/id/LC_MESSAGES/glib20.mo
/usr/local/share/locale/is/LC_MESSAGES/glib20.mo
/usr/local/share/locale/it/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ja/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ka/LC_MESSAGES/glib20.mo
/usr/local/share/locale/kk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/kn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ko/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ku/LC_MESSAGES/glib20.mo
/usr/local/share/locale/lt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/lv/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mai/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mg/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ml/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ms/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nb/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nds/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ne/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/oc/LC_MESSAGES/glib20.mo
/usr/local/share/locale/or/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ps/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pt_BR/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ro/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ru/LC_MESSAGES/glib20.mo
/usr/local/share/locale/rw/LC_MESSAGES/glib20.mo
/usr/local/share/locale/si/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sq/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr@ije/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr@latin/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sv/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ta/LC_MESSAGES/glib20.mo
/usr/local/share/locale/te/LC_MESSAGES/glib20.mo
/usr/local/share/locale/th/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ug/LC_MESSAGES/glib20.mo
/usr/local/share/locale/uk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/vi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/wa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/xh/LC_MESSAGES/glib20.mo
/usr/local/share/locale/yi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_CN/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_HK/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_TW/LC_MESSAGES/glib20.mo
/usr/local/Library/LinkedKegs/gd
/usr/local/Library/LinkedKegs/glib
/usr/local/Library/LinkedKegs/gnuplot
/usr/local/Library/LinkedKegs/jasper
/usr/local/Library/LinkedKegs/jpeg
/usr/local/Library/LinkedKegs/latex2rtf
/usr/local/Library/LinkedKegs/libtiff
/usr/local/Library/LinkedKegs/lua
/usr/local/Library/LinkedKegs/pango
/usr/local/Library/LinkedKegs/pixman
/usr/local/Library/LinkedKegs/pkg-config
/usr/local/Library/LinkedKegs/wget
/usr/local/Library/LinkedKegs/xz
Warning: Enthought Python was found in your PATH.
This can cause build problems, as this software installs its own
copies of iconv and libxml2 into directories that are picked up by
other build systems.
Warning: Python is installed at /Library/Frameworks/Python.framework
Homebrew only supports building against the System-provided Python or a
brewed Python. In particular, Pythons installed to /Library can interfere
with other software installs.
Warning: You have MacPorts or Fink installed:
/opt/local/bin/port
This can cause trouble. You don't have to uninstall them, but you may want to
temporarily move them out of the way, e.g.
sudo mv /opt/local ~/macports
Warning: You have uncommitted modifications to Homebrew
If this a surprise to you, then you should stash these modifications.
Stashing returns Homebrew to a pristine state but can be undone
should you later need to do so for some reason.
cd /usr/local/Library && git stash && git clean -d -f
Warning: /usr/bin occurs before /usr/local/bin
This means that system-provided programs will be used instead of those
provided by Homebrew. The following tools exist at both paths:
2to3
2to3-2.7
idle
idle2.7
pydoc
pydoc2.7
python
python-config
python2.7
python2.7-config
pythonw
pythonw2.7
smtpd.py
smtpd2.7.py
Consider setting your PATH so that /usr/local/bin
occurs before /usr/bin. Here is a one-liner:
echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
Warning: You have a non-Homebrew 'pkg-config' in your PATH:
/opt/local/bin/pkg-config
`./configure` may have problems finding brew-installed packages using
this other pkg-config.
rdominguez5359:~ racheledominguez$
I did two suggestions:
rdominguez5359:~ racheledominguez$ sudo mv /opt/local ~/macports
Password:
rdominguez5359:~ racheledominguez$ cd /usr/local/Library && git stash && git clean -d -f
No local changes to save
Removing Aliases/firefly
Removing Aliases/fsa
Removing Aliases/gjstest
Removing Aliases/hugs
Removing Aliases/jslint
Removing Aliases/oiio
Removing Aliases/omake
Removing Aliases/p4
Removing Aliases/p4d
Removing Aliases/rbx
Removing Aliases/ree
Removing Aliases/saga
Removing Aliases/umfpack
Removing Contributions/cmds/
Removing Contributions/install_homebrew.rb
Removing Formula/abiword.rb
Removing Formula/abyss.rb
Removing Formula/adol-c.rb
Removing Formula/agrep.rb
Removing Formula/aimage.rb
Removing Formula/ann.rb
Removing Formula/apiextractor.rb
Removing Formula/aplus.rb
Removing Formula/appledoc.rb
Removing Formula/appswitch.rb
Removing Formula/armadillo.rb
Removing Formula/asymptote.rb
Removing Formula/atlassian-plugin-sdk.rb
Removing Formula/avanor.rb
Removing Formula/aws-iam-tools.rb
Removing Formula/bali-phy.rb
Removing Formula/bedtools.rb
Removing Formula/blackbox.rb
Removing Formula/blast.rb
Removing Formula/bonnie.rb
Removing Formula/bowtie.rb
Removing Formula/bwa.rb
Removing Formula/cantera.rb
Removing Formula/cast.rb
Removing Formula/catdoc.rb
Removing Formula/cdo.rb
Removing Formula/cheops.rb
Removing Formula/chmox.rb
Removing Formula/clam.rb
Removing Formula/cliweather.rb
Removing Formula/clojure-contrib.rb
Removing Formula/clojure.rb
Removing Formula/clustal-w.rb
Removing Formula/cminpack.rb
Removing Formula/cmucl.rb
Removing Formula/colloquypush.rb
Removing Formula/color-code.rb
Removing Formula/colpack.rb
Removing Formula/connect.rb
Removing Formula/crossroads.rb
Removing Formula/cufflinks.rb
Removing Formula/curlpp.rb
Removing Formula/darwinbuild.rb
Removing Formula/denyhosts.rb
Removing Formula/despotify.rb
Removing Formula/dia.rb
Removing Formula/diffpdf.rb
Removing Formula/dotwrp.rb
Removing Formula/drizzle.rb
Removing Formula/dsniff.rb
Removing Formula/emboss.rb
Removing Formula/erviz.rb
Removing Formula/exonerate.rb
Removing Formula/fann.rb
Removing Formula/fast-statistical-alignment.rb
Removing Formula/fastri.rb
Removing Formula/fastx_toolkit.rb
Removing Formula/field3d.rb
Removing Formula/fiwalk.rb
Removing Formula/flann.rb
Removing Formula/flare.rb
Removing Formula/flex_sdk.rb
Removing Formula/flume.rb
Removing Formula/flvtool++.rb
Removing Formula/fuego.rb
Removing Formula/gccxml.rb
Removing Formula/generatorrunner.rb
Removing Formula/gerrit-tools.rb
Removing Formula/gfortran.rb
Removing Formula/git-diffall.rb
Removing Formula/git-hg.rb
Removing Formula/git-subtree.rb
Removing Formula/git-svn-abandon.rb
Removing Formula/git-utils.rb
Removing Formula/glfw.rb
Removing Formula/glpk.rb
Removing Formula/gmap-gsnap.rb
Removing Formula/gmock.rb
Removing Formula/gmt.rb
Removing Formula/gnu-arch.rb
Removing Formula/gnu-shogi.rb
Removing Formula/google-js-test.rb
Removing Formula/grads.rb
Removing Formula/gremlin.rb
Removing Formula/gromacs.rb
Removing Formula/gst-ffmpeg.rb
Removing Formula/gst-rtsp.rb
Removing Formula/gsutil.rb
Removing Formula/gtest.rb
Removing Formula/gtkglextmm.rb
Removing Formula/hdf5.rb
Removing Formula/hllib.rb
Removing Formula/hmmer.rb
Removing Formula/hugs98.rb
Removing Formula/igraph.rb
Removing Formula/ipopt.rb
Removing Formula/jscoverage.rb
Removing Formula/jsl.rb
Removing Formula/jstalk.rb
Removing Formula/justniffer.rb
Removing Formula/kelbt.rb
Removing Formula/kismet.rb
Removing Formula/kiwi.rb
Removing Formula/knife-completion.rb
Removing Formula/lastfm_fplib.rb
Removing Formula/ldid.rb
Removing Formula/libdrizzle.rb
Removing Formula/libemu.rb
Removing Formula/libgarmin.rb
Removing Formula/libgsasl.rb
Removing Formula/libgtextutils.rb
Removing Formula/libpar2.rb
Removing Formula/libpurple.rb
Removing Formula/librets.rb
Removing Formula/libspotify.rb
Removing Formula/libunique.rb
Removing Formula/lmutil.rb
Removing Formula/mafft.rb
Removing Formula/mathgl.rb
Removing Formula/mathomatic.rb
Removing Formula/maxima.rb
Removing Formula/mcl.rb
Removing Formula/metapixel.rb
Removing Formula/metasploit.rb
Removing Formula/metis.rb
Removing Formula/minc.rb
Removing Formula/mira.rb
Removing Formula/mlton.rb
Removing Formula/mod_python.rb
Removing Formula/mod_wsgi.rb
Removing Formula/mosh.rb
Removing Formula/mosml.rb
Removing Formula/mpio.rb
Removing Formula/mpsolve.rb
Removing Formula/mrfast.rb
Removing Formula/msgpack-rpc.rb
Removing Formula/mt-daapd.rb
Removing Formula/muscle.rb
Removing Formula/mydumper.rb
Removing Formula/nailgun.rb
Removing Formula/nauty.rb
Removing Formula/ncview.rb
Removing Formula/net-nuclear.rb
Removing Formula/netcdf.rb
Removing Formula/netsed.rb
Removing Formula/o-make.rb
Removing Formula/obby.rb
Removing Formula/octave.rb
Removing Formula/odt2txt.rb
Removing Formula/omega.rb
Removing Formula/oorexx.rb
Removing Formula/open-sg.rb
Removing Formula/opencv.rb
Removing Formula/openimageio.rb
Removing Formula/openmeeg.rb
Removing Formula/opentracker.rb
Removing Formula/otx.rb
Removing Formula/paml.rb
Removing Formula/parmetis.rb
Removing Formula/perforce-proxy.rb
Removing Formula/perforce-server.rb
Removing Formula/perforce.rb
Removing Formula/phyml.rb
Removing Formula/pil.rb
Removing Formula/play.rb
Removing Formula/playdar.rb
Removing Formula/plink.rb
Removing Formula/pngrewrite.rb
Removing Formula/pos.rb
Removing Formula/ppl.rb
Removing Formula/primer3.rb
Removing Formula/prodigal.rb
Removing Formula/qfits.rb
Removing Formula/qhull.rb
Removing Formula/qrupdate.rb
Removing Formula/qt-mobility.rb
Removing Formula/quickfix.rb
Removing Formula/quicktree.rb
Removing Formula/r.rb
Removing Formula/rails-completion.rb
Removing Formula/readpst.rb
Removing Formula/redis-tools.rb
Removing Formula/riak-search.rb
Removing Formula/rogue.rb
Removing Formula/rubinius.rb
Removing Formula/ruby-enterprise-edition.rb
Removing Formula/ruby-odbc.rb
Removing Formula/saga-core.rb
Removing Formula/samtools.rb
Removing Formula/scalate.rb
Removing Formula/scalpel.rb
Removing Formula/scotch.rb
Removing Formula/scrotwm.rb
Removing Formula/scummvm.rb
Removing Formula/shaper-probe.rb
Removing Formula/shark.rb
Removing Formula/sigar.rb
Removing Formula/ski.rb
Removing Formula/smpeg.rb
Removing Formula/staticrouted.rb
Removing Formula/stp.rb
Removing Formula/strategoxt.rb
Removing Formula/suite-sparse.rb
Removing Formula/sundials.rb
Removing Formula/symphony.rb
Removing Formula/synergy.rb
Removing Formula/syslog-ng.rb
Removing Formula/tabix.rb
Removing Formula/tcpstat.rb
Removing Formula/titlecase.rb
Removing Formula/tmap.rb
Removing Formula/tophat.rb
Removing Formula/transcode.rb
Removing Formula/triangle.rb
Removing Formula/uif2iso.rb
Removing Formula/unafold.rb
Removing Formula/ungif.rb
Removing Formula/unyaffs.rb
Removing Formula/urweb.rb
Removing Formula/v8cgi.rb
Removing Formula/vcftools.rb
Removing Formula/velvet.rb
Removing Formula/vimeo-downloader.rb
Removing Formula/vips.rb
Removing Formula/vtk.rb
Removing Formula/willgit.rb
Removing Formula/wkhtmltopdf.rb
Removing Formula/wol.rb
Removing Formula/wp-cli.rb
Removing Formula/xaw3d.rb
Removing Formula/xml2rfc.rb
Removing Homebrew/LICENSE
Removing Homebrew/cmd/--config.rb
Removing Homebrew/cmd/versions.rb
Removing Homebrew/compat/brewkit.rb
Removing Homebrew/compat/compatibility.rb
Removing Homebrew/patches.rb
Removing Homebrew/test/tarballs/configure_fails.tar.gz
Removing Homebrew/test/test_bucket.rb
Removing Homebrew/test/test_checksums.rb
Removing Homebrew/test/test_compilers.rb
Removing Homebrew/test/test_external_deps.rb
Removing Homebrew/test/test_patches.rb
Removing Homebrew/test/test_pathname_install.rb
Removing Homebrew/vendor/LICENSE
Removing Homebrew/vendor/multi_json.rb
Removing Homebrew/vendor/multi_json/
rdominguez5359:Library racheledominguez$
rdominguez5359:Library racheledominguez$ brew prune
Pruned 0 dead formulae
Pruned 130 symbolic links and 199 directories from /usr/local
I don't want to screw up my caanopy install, so I'm not going to change paths. Output from brew doctor now:
rdominguez5359:Library racheledominguez$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Enthought Python was found in your PATH.
This can cause build problems, as this software installs its own
copies of iconv and libxml2 into directories that are picked up by
other build systems.
Warning: Python is installed at /Library/Frameworks/Python.framework
Homebrew only supports building against the System-provided Python or a
brewed Python. In particular, Pythons installed to /Library can interfere
with other software installs.
Warning: /usr/bin occurs before /usr/local/bin
This means that system-provided programs will be used instead of those
provided by Homebrew. The following tools exist at both paths:
2to3
2to3-2.7
idle
idle2.7
pydoc
pydoc2.7
python
python-config
python2.7
python2.7-config
pythonw
pythonw2.7
smtpd.py
smtpd2.7.py
Consider setting your PATH so that /usr/local/bin
occurs before /usr/bin. Here is a one-liner:
echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
Need X-Code and X11. Apple says:
"X11 is no longer included with OS X, but X11 server and client libraries for OS X are available from the XQuartz project: http://xquartz.macosforge.org. You should use the latest available version of XQuartz. " (http://support.apple.com/kb/HT5293)
As a test, I downloaded Xcode6-Beta4 and XQuartz 2.7.6. Both seemed to install fine. Needed to logout and log back in for X11.
Reinstalled homebrew. Looks good:
rdominguez5359:~ racheledominguez$ ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
==> This script will install:
/usr/local/bin/brew
/usr/local/Library/...
/usr/local/share/man/man1/brew.1
Press RETURN to continue or any other key to abort
==> /usr/bin/sudo /bin/mkdir /Library/Caches/Homebrew
Password:
==> /usr/bin/sudo /bin/chmod g+rwx /Library/Caches/Homebrew
==> Downloading and installing Homebrew...
remote: Counting objects: 188680, done.
remote: Compressing objects: 100% (51573/51573), done.
remote: Total 188680 (delta 135954), reused 188655 (delta 135934)
Receiving objects: 100% (188680/188680), 37.53 MiB | 7.43 MiB/s, done.
Resolving deltas: 100% (135954/135954), done.
From https://github.com/Homebrew/homebrew
* [new branch] master -> origin/master
Checking out files: 100% (3282/3282), done.
HEAD is now at 896dad4 Pathname.binread
==> Installation successful!
==> Next steps
Run `brew doctor` before you install anything
Run `brew help` to get started
rdominguez5359:~ racheledominguez$
Output of brew doctor:
rdominguez5359:~ racheledominguez$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Broken symlinks were found. Remove them with `brew prune`:
/usr/local/etc/bash_completion.d/gdbus-bash-completion.sh
/usr/local/etc/bash_completion.d/gresource-bash-completion.sh
/usr/local/etc/bash_completion.d/gsettings-bash-completion.sh
/usr/local/etc/pango/pango.modules
/usr/local/etc/pango/pangox.aliases
/usr/local/lib/pkgconfig/gdlib.pc
/usr/local/lib/pkgconfig/gio-2.0.pc
/usr/local/lib/pkgconfig/gio-unix-2.0.pc
/usr/local/lib/pkgconfig/glib-2.0.pc
/usr/local/lib/pkgconfig/gmodule-2.0.pc
/usr/local/lib/pkgconfig/gmodule-export-2.0.pc
/usr/local/lib/pkgconfig/gmodule-no-export-2.0.pc
/usr/local/lib/pkgconfig/gobject-2.0.pc
/usr/local/lib/pkgconfig/gthread-2.0.pc
/usr/local/lib/pkgconfig/liblzma.pc
/usr/local/lib/pkgconfig/libtiff-4.pc
/usr/local/lib/pkgconfig/lua.pc
/usr/local/lib/pkgconfig/pango.pc
/usr/local/lib/pkgconfig/pangocairo.pc
/usr/local/lib/pkgconfig/pangoft2.pc
/usr/local/lib/pkgconfig/pangox.pc
/usr/local/lib/pkgconfig/pangoxft.pc
/usr/local/lib/pkgconfig/pixman-1.pc
/usr/local/share/locale/af/LC_MESSAGES/glib20.mo
/usr/local/share/locale/am/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ar/LC_MESSAGES/glib20.mo
/usr/local/share/locale/as/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ast/LC_MESSAGES/glib20.mo
/usr/local/share/locale/az/LC_MESSAGES/glib20.mo
/usr/local/share/locale/be/LC_MESSAGES/glib20.mo
/usr/local/share/locale/be@latin/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bg/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bn_IN/LC_MESSAGES/glib20.mo
/usr/local/share/locale/bs/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ca/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ca@valencia/LC_MESSAGES/glib20.mo
/usr/local/share/locale/cs/LC_MESSAGES/glib20.mo
/usr/local/share/locale/cy/LC_MESSAGES/glib20.mo
/usr/local/share/locale/da/LC_MESSAGES/glib20.mo
/usr/local/share/locale/de/LC_MESSAGES/glib20.mo
/usr/local/share/locale/dz/LC_MESSAGES/glib20.mo
/usr/local/share/locale/el/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en@shaw/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en_CA/LC_MESSAGES/glib20.mo
/usr/local/share/locale/en_GB/LC_MESSAGES/glib20.mo
/usr/local/share/locale/eo/LC_MESSAGES/glib20.mo
/usr/local/share/locale/es/LC_MESSAGES/glib20.mo
/usr/local/share/locale/et/LC_MESSAGES/glib20.mo
/usr/local/share/locale/eu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/fr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ga/LC_MESSAGES/glib20.mo
/usr/local/share/locale/gl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/gu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/he/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hu/LC_MESSAGES/glib20.mo
/usr/local/share/locale/hy/LC_MESSAGES/glib20.mo
/usr/local/share/locale/id/LC_MESSAGES/glib20.mo
/usr/local/share/locale/is/LC_MESSAGES/glib20.mo
/usr/local/share/locale/it/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ja/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ka/LC_MESSAGES/glib20.mo
/usr/local/share/locale/kk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/kn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ko/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ku/LC_MESSAGES/glib20.mo
/usr/local/share/locale/lt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/lv/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mai/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mg/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ml/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/mr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ms/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nb/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nds/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ne/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/nn/LC_MESSAGES/glib20.mo
/usr/local/share/locale/oc/LC_MESSAGES/glib20.mo
/usr/local/share/locale/or/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ps/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/pt_BR/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ro/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ru/LC_MESSAGES/glib20.mo
/usr/local/share/locale/rw/LC_MESSAGES/glib20.mo
/usr/local/share/locale/si/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sq/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr@ije/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sr@latin/LC_MESSAGES/glib20.mo
/usr/local/share/locale/sv/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ta/LC_MESSAGES/glib20.mo
/usr/local/share/locale/te/LC_MESSAGES/glib20.mo
/usr/local/share/locale/th/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tl/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tr/LC_MESSAGES/glib20.mo
/usr/local/share/locale/tt/LC_MESSAGES/glib20.mo
/usr/local/share/locale/ug/LC_MESSAGES/glib20.mo
/usr/local/share/locale/uk/LC_MESSAGES/glib20.mo
/usr/local/share/locale/vi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/wa/LC_MESSAGES/glib20.mo
/usr/local/share/locale/xh/LC_MESSAGES/glib20.mo
/usr/local/share/locale/yi/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_CN/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_HK/LC_MESSAGES/glib20.mo
/usr/local/share/locale/zh_TW/LC_MESSAGES/glib20.mo
/usr/local/Library/LinkedKegs/gd
/usr/local/Library/LinkedKegs/glib
/usr/local/Library/LinkedKegs/gnuplot
/usr/local/Library/LinkedKegs/jasper
/usr/local/Library/LinkedKegs/jpeg
/usr/local/Library/LinkedKegs/latex2rtf
/usr/local/Library/LinkedKegs/libtiff
/usr/local/Library/LinkedKegs/lua
/usr/local/Library/LinkedKegs/pango
/usr/local/Library/LinkedKegs/pixman
/usr/local/Library/LinkedKegs/pkg-config
/usr/local/Library/LinkedKegs/wget
/usr/local/Library/LinkedKegs/xz
Warning: Enthought Python was found in your PATH.
This can cause build problems, as this software installs its own
copies of iconv and libxml2 into directories that are picked up by
other build systems.
Warning: Python is installed at /Library/Frameworks/Python.framework
Homebrew only supports building against the System-provided Python or a
brewed Python. In particular, Pythons installed to /Library can interfere
with other software installs.
Warning: You have MacPorts or Fink installed:
/opt/local/bin/port
This can cause trouble. You don't have to uninstall them, but you may want to
temporarily move them out of the way, e.g.
sudo mv /opt/local ~/macports
Warning: You have uncommitted modifications to Homebrew
If this a surprise to you, then you should stash these modifications.
Stashing returns Homebrew to a pristine state but can be undone
should you later need to do so for some reason.
cd /usr/local/Library && git stash && git clean -d -f
Warning: /usr/bin occurs before /usr/local/bin
This means that system-provided programs will be used instead of those
provided by Homebrew. The following tools exist at both paths:
2to3
2to3-2.7
idle
idle2.7
pydoc
pydoc2.7
python
python-config
python2.7
python2.7-config
pythonw
pythonw2.7
smtpd.py
smtpd2.7.py
Consider setting your PATH so that /usr/local/bin
occurs before /usr/bin. Here is a one-liner:
echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
Warning: You have a non-Homebrew 'pkg-config' in your PATH:
/opt/local/bin/pkg-config
`./configure` may have problems finding brew-installed packages using
this other pkg-config.
rdominguez5359:~ racheledominguez$
I did two suggestions:
rdominguez5359:~ racheledominguez$ sudo mv /opt/local ~/macports
Password:
rdominguez5359:~ racheledominguez$ cd /usr/local/Library && git stash && git clean -d -f
No local changes to save
Removing Aliases/firefly
Removing Aliases/fsa
Removing Aliases/gjstest
Removing Aliases/hugs
Removing Aliases/jslint
Removing Aliases/oiio
Removing Aliases/omake
Removing Aliases/p4
Removing Aliases/p4d
Removing Aliases/rbx
Removing Aliases/ree
Removing Aliases/saga
Removing Aliases/umfpack
Removing Contributions/cmds/
Removing Contributions/install_homebrew.rb
Removing Formula/abiword.rb
Removing Formula/abyss.rb
Removing Formula/adol-c.rb
Removing Formula/agrep.rb
Removing Formula/aimage.rb
Removing Formula/ann.rb
Removing Formula/apiextractor.rb
Removing Formula/aplus.rb
Removing Formula/appledoc.rb
Removing Formula/appswitch.rb
Removing Formula/armadillo.rb
Removing Formula/asymptote.rb
Removing Formula/atlassian-plugin-sdk.rb
Removing Formula/avanor.rb
Removing Formula/aws-iam-tools.rb
Removing Formula/bali-phy.rb
Removing Formula/bedtools.rb
Removing Formula/blackbox.rb
Removing Formula/blast.rb
Removing Formula/bonnie.rb
Removing Formula/bowtie.rb
Removing Formula/bwa.rb
Removing Formula/cantera.rb
Removing Formula/cast.rb
Removing Formula/catdoc.rb
Removing Formula/cdo.rb
Removing Formula/cheops.rb
Removing Formula/chmox.rb
Removing Formula/clam.rb
Removing Formula/cliweather.rb
Removing Formula/clojure-contrib.rb
Removing Formula/clojure.rb
Removing Formula/clustal-w.rb
Removing Formula/cminpack.rb
Removing Formula/cmucl.rb
Removing Formula/colloquypush.rb
Removing Formula/color-code.rb
Removing Formula/colpack.rb
Removing Formula/connect.rb
Removing Formula/crossroads.rb
Removing Formula/cufflinks.rb
Removing Formula/curlpp.rb
Removing Formula/darwinbuild.rb
Removing Formula/denyhosts.rb
Removing Formula/despotify.rb
Removing Formula/dia.rb
Removing Formula/diffpdf.rb
Removing Formula/dotwrp.rb
Removing Formula/drizzle.rb
Removing Formula/dsniff.rb
Removing Formula/emboss.rb
Removing Formula/erviz.rb
Removing Formula/exonerate.rb
Removing Formula/fann.rb
Removing Formula/fast-statistical-alignment.rb
Removing Formula/fastri.rb
Removing Formula/fastx_toolkit.rb
Removing Formula/field3d.rb
Removing Formula/fiwalk.rb
Removing Formula/flann.rb
Removing Formula/flare.rb
Removing Formula/flex_sdk.rb
Removing Formula/flume.rb
Removing Formula/flvtool++.rb
Removing Formula/fuego.rb
Removing Formula/gccxml.rb
Removing Formula/generatorrunner.rb
Removing Formula/gerrit-tools.rb
Removing Formula/gfortran.rb
Removing Formula/git-diffall.rb
Removing Formula/git-hg.rb
Removing Formula/git-subtree.rb
Removing Formula/git-svn-abandon.rb
Removing Formula/git-utils.rb
Removing Formula/glfw.rb
Removing Formula/glpk.rb
Removing Formula/gmap-gsnap.rb
Removing Formula/gmock.rb
Removing Formula/gmt.rb
Removing Formula/gnu-arch.rb
Removing Formula/gnu-shogi.rb
Removing Formula/google-js-test.rb
Removing Formula/grads.rb
Removing Formula/gremlin.rb
Removing Formula/gromacs.rb
Removing Formula/gst-ffmpeg.rb
Removing Formula/gst-rtsp.rb
Removing Formula/gsutil.rb
Removing Formula/gtest.rb
Removing Formula/gtkglextmm.rb
Removing Formula/hdf5.rb
Removing Formula/hllib.rb
Removing Formula/hmmer.rb
Removing Formula/hugs98.rb
Removing Formula/igraph.rb
Removing Formula/ipopt.rb
Removing Formula/jscoverage.rb
Removing Formula/jsl.rb
Removing Formula/jstalk.rb
Removing Formula/justniffer.rb
Removing Formula/kelbt.rb
Removing Formula/kismet.rb
Removing Formula/kiwi.rb
Removing Formula/knife-completion.rb
Removing Formula/lastfm_fplib.rb
Removing Formula/ldid.rb
Removing Formula/libdrizzle.rb
Removing Formula/libemu.rb
Removing Formula/libgarmin.rb
Removing Formula/libgsasl.rb
Removing Formula/libgtextutils.rb
Removing Formula/libpar2.rb
Removing Formula/libpurple.rb
Removing Formula/librets.rb
Removing Formula/libspotify.rb
Removing Formula/libunique.rb
Removing Formula/lmutil.rb
Removing Formula/mafft.rb
Removing Formula/mathgl.rb
Removing Formula/mathomatic.rb
Removing Formula/maxima.rb
Removing Formula/mcl.rb
Removing Formula/metapixel.rb
Removing Formula/metasploit.rb
Removing Formula/metis.rb
Removing Formula/minc.rb
Removing Formula/mira.rb
Removing Formula/mlton.rb
Removing Formula/mod_python.rb
Removing Formula/mod_wsgi.rb
Removing Formula/mosh.rb
Removing Formula/mosml.rb
Removing Formula/mpio.rb
Removing Formula/mpsolve.rb
Removing Formula/mrfast.rb
Removing Formula/msgpack-rpc.rb
Removing Formula/mt-daapd.rb
Removing Formula/muscle.rb
Removing Formula/mydumper.rb
Removing Formula/nailgun.rb
Removing Formula/nauty.rb
Removing Formula/ncview.rb
Removing Formula/net-nuclear.rb
Removing Formula/netcdf.rb
Removing Formula/netsed.rb
Removing Formula/o-make.rb
Removing Formula/obby.rb
Removing Formula/octave.rb
Removing Formula/odt2txt.rb
Removing Formula/omega.rb
Removing Formula/oorexx.rb
Removing Formula/open-sg.rb
Removing Formula/opencv.rb
Removing Formula/openimageio.rb
Removing Formula/openmeeg.rb
Removing Formula/opentracker.rb
Removing Formula/otx.rb
Removing Formula/paml.rb
Removing Formula/parmetis.rb
Removing Formula/perforce-proxy.rb
Removing Formula/perforce-server.rb
Removing Formula/perforce.rb
Removing Formula/phyml.rb
Removing Formula/pil.rb
Removing Formula/play.rb
Removing Formula/playdar.rb
Removing Formula/plink.rb
Removing Formula/pngrewrite.rb
Removing Formula/pos.rb
Removing Formula/ppl.rb
Removing Formula/primer3.rb
Removing Formula/prodigal.rb
Removing Formula/qfits.rb
Removing Formula/qhull.rb
Removing Formula/qrupdate.rb
Removing Formula/qt-mobility.rb
Removing Formula/quickfix.rb
Removing Formula/quicktree.rb
Removing Formula/r.rb
Removing Formula/rails-completion.rb
Removing Formula/readpst.rb
Removing Formula/redis-tools.rb
Removing Formula/riak-search.rb
Removing Formula/rogue.rb
Removing Formula/rubinius.rb
Removing Formula/ruby-enterprise-edition.rb
Removing Formula/ruby-odbc.rb
Removing Formula/saga-core.rb
Removing Formula/samtools.rb
Removing Formula/scalate.rb
Removing Formula/scalpel.rb
Removing Formula/scotch.rb
Removing Formula/scrotwm.rb
Removing Formula/scummvm.rb
Removing Formula/shaper-probe.rb
Removing Formula/shark.rb
Removing Formula/sigar.rb
Removing Formula/ski.rb
Removing Formula/smpeg.rb
Removing Formula/staticrouted.rb
Removing Formula/stp.rb
Removing Formula/strategoxt.rb
Removing Formula/suite-sparse.rb
Removing Formula/sundials.rb
Removing Formula/symphony.rb
Removing Formula/synergy.rb
Removing Formula/syslog-ng.rb
Removing Formula/tabix.rb
Removing Formula/tcpstat.rb
Removing Formula/titlecase.rb
Removing Formula/tmap.rb
Removing Formula/tophat.rb
Removing Formula/transcode.rb
Removing Formula/triangle.rb
Removing Formula/uif2iso.rb
Removing Formula/unafold.rb
Removing Formula/ungif.rb
Removing Formula/unyaffs.rb
Removing Formula/urweb.rb
Removing Formula/v8cgi.rb
Removing Formula/vcftools.rb
Removing Formula/velvet.rb
Removing Formula/vimeo-downloader.rb
Removing Formula/vips.rb
Removing Formula/vtk.rb
Removing Formula/willgit.rb
Removing Formula/wkhtmltopdf.rb
Removing Formula/wol.rb
Removing Formula/wp-cli.rb
Removing Formula/xaw3d.rb
Removing Formula/xml2rfc.rb
Removing Homebrew/LICENSE
Removing Homebrew/cmd/--config.rb
Removing Homebrew/cmd/versions.rb
Removing Homebrew/compat/brewkit.rb
Removing Homebrew/compat/compatibility.rb
Removing Homebrew/patches.rb
Removing Homebrew/test/tarballs/configure_fails.tar.gz
Removing Homebrew/test/test_bucket.rb
Removing Homebrew/test/test_checksums.rb
Removing Homebrew/test/test_compilers.rb
Removing Homebrew/test/test_external_deps.rb
Removing Homebrew/test/test_patches.rb
Removing Homebrew/test/test_pathname_install.rb
Removing Homebrew/vendor/LICENSE
Removing Homebrew/vendor/multi_json.rb
Removing Homebrew/vendor/multi_json/
rdominguez5359:Library racheledominguez$
rdominguez5359:Library racheledominguez$ brew prune
Pruned 0 dead formulae
Pruned 130 symbolic links and 199 directories from /usr/local
I don't want to screw up my caanopy install, so I'm not going to change paths. Output from brew doctor now:
rdominguez5359:Library racheledominguez$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Enthought Python was found in your PATH.
This can cause build problems, as this software installs its own
copies of iconv and libxml2 into directories that are picked up by
other build systems.
Warning: Python is installed at /Library/Frameworks/Python.framework
Homebrew only supports building against the System-provided Python or a
brewed Python. In particular, Pythons installed to /Library can interfere
with other software installs.
Warning: /usr/bin occurs before /usr/local/bin
This means that system-provided programs will be used instead of those
provided by Homebrew. The following tools exist at both paths:
2to3
2to3-2.7
idle
idle2.7
pydoc
pydoc2.7
python
python-config
python2.7
python2.7-config
pythonw
pythonw2.7
smtpd.py
smtpd2.7.py
Consider setting your PATH so that /usr/local/bin
occurs before /usr/bin. Here is a one-liner:
echo export PATH='/usr/local/bin:$PATH' >> ~/.bash_profile
New iMac setup
Broaddus will install the math lab image which will include:
Mathematica 10
Office 2011
TexShop and LaTeXit
Eclipse Kepler
Keynote, etc (free academic versions)
MatLab
Need to install:
Dropbox
Filelight (http://methylblue.com/filelight/)
Firefox?
Chrome?
Spotify
Quicksilver
Turning Point
Gimp
Aquamacs/ aquaterm
Python
Canop
Gephi
May have a problem with iPhoto and iMovie because Broaddus already used his apple ID to install.
Homebrew (https://github.com/Homebrew/homebrew/wiki/Installation)- read requirements
-Gnuplot main page- current release is 4.6: (http://www.gnuplot.info/)
-Gnuplot for Mac- version 4.4.4: (http://www.macupdate.com/app/mac/16168/gnuplot)
Post on installing gnuplot on OS-X:
If you get macports installed (did not work on current machine)
http://mithunme.wordpress.com/2013/02/10/installing-gnuplot-in-mac-os-x/
http://www.miscdebris.net/blog/2010/03/25/install-gnuplot-4-4-0-on-mac-os-x/
Requirements:
--x-code
--ReadLine lib for gnuplot
Mathematica 10
Office 2011
TexShop and LaTeXit
Eclipse Kepler
Keynote, etc (free academic versions)
MatLab
Need to install:
Dropbox
Filelight (http://methylblue.com/filelight/)
Firefox?
Chrome?
Spotify
Quicksilver
Turning Point
Gimp
Aquamacs/ aquaterm
Python
Canop
Gephi
May have a problem with iPhoto and iMovie because Broaddus already used his apple ID to install.
Homebrew (https://github.com/Homebrew/homebrew/wiki/Installation)- read requirements
-Gnuplot main page- current release is 4.6: (http://www.gnuplot.info/)
-Gnuplot for Mac- version 4.4.4: (http://www.macupdate.com/app/mac/16168/gnuplot)
Post on installing gnuplot on OS-X:
If you get macports installed (did not work on current machine)
http://mithunme.wordpress.com/2013/02/10/installing-gnuplot-in-mac-os-x/
http://www.miscdebris.net/blog/2010/03/25/install-gnuplot-4-4-0-on-mac-os-x/
Requirements:
--x-code
--ReadLine lib for gnuplot
Tuesday, July 22, 2014
New imac!
New iMac on it's way:
Product # Product Description Qty Price Ext Price
__________ ______________________________ ______ ________ __________
Z0PG IMAC 27"/QC/ 1 3,654.00 3,654.00
The unit above contains the following options (configuration ID Z0PG0092D):
GRAPHIC 065-C282 NVIDIAGeForceGTX780M 4GB GDDR5
PROCESSOR 065-C27V 3.5GHz Quad-core Intel Core i7
MEMORY 065-C1GN 32GB 1600MHz DDR3 SDRAM-4X8GB
HARD DRIVE 065-C223 1TB Flash Storage
MOUSE 065-C1H4 APPLE MAGIC MOUSE
BATTERY CHARGER 065-C1J9 NO APPLE BATTERY CHARGER
FINAL CUT PRO 065-C171 NONE
LOGIC PRO 065-C172 NONE
APERTURE 065-C173 NONE
APPLE KEYBOARD 065-C1H8 Apple WL Kybd (English)+UG
COUNTRY KIT 065-C1KK COUNTRY KIT
______________________________
Product # Product Description Qty Price Ext Price
__________ ______________________________ ______ ________ __________
MD564ZM/A APPLE USB SUPERDRIVE-ZML 1 79.00 79.00
______________________________
Subtotal: $ 3,733.00
Sales Tax: $ 0.00
Total price for your order: $ 3,733.00
Install:
homebrew
aquamacs
gnuplot
python/ canopy
eclipse/ java
filelight
mathematica
dropbox
google drive
gimp
texshop
come with office?
keynote?
xcode
Set up:
time machine
Product # Product Description Qty Price Ext Price
__________ ______________________________ ______ ________ __________
Z0PG IMAC 27"/QC/ 1 3,654.00 3,654.00
The unit above contains the following options (configuration ID Z0PG0092D):
GRAPHIC 065-C282 NVIDIAGeForceGTX780M 4GB GDDR5
PROCESSOR 065-C27V 3.5GHz Quad-core Intel Core i7
MEMORY 065-C1GN 32GB 1600MHz DDR3 SDRAM-4X8GB
HARD DRIVE 065-C223 1TB Flash Storage
MOUSE 065-C1H4 APPLE MAGIC MOUSE
BATTERY CHARGER 065-C1J9 NO APPLE BATTERY CHARGER
FINAL CUT PRO 065-C171 NONE
LOGIC PRO 065-C172 NONE
APERTURE 065-C173 NONE
APPLE KEYBOARD 065-C1H8 Apple WL Kybd (English)+UG
COUNTRY KIT 065-C1KK COUNTRY KIT
______________________________
Product # Product Description Qty Price Ext Price
__________ ______________________________ ______ ________ __________
MD564ZM/A APPLE USB SUPERDRIVE-ZML 1 79.00 79.00
______________________________
Subtotal: $ 3,733.00
Sales Tax: $ 0.00
Total price for your order: $ 3,733.00
Install:
homebrew
aquamacs
gnuplot
python/ canopy
eclipse/ java
filelight
mathematica
dropbox
google drive
gimp
texshop
come with office?
keynote?
xcode
Set up:
time machine
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